tests/testthat/test-tools-system.R

In ropensci/phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

# LIBS
library(phylotaR)
library(testthat)

# VARS
wd <- tempdir()
ps <- parameters(wd = wd)

# TEST
context("Testing 'tools-system'")
phylotaR:::cleanup(wd)
test_that("cmdln() works", {
  res <- phylotaR:::cmdln(cmd = "notacommand", args = list(), ps = ps)
  expect_true(res[["status"]] == 1)
  res <- phylotaR:::cmdln(
    cmd = "notacommand", args = list(), lgfl =
      file.path(wd, "log"), ps = ps
  )
  expect_true(file.exists(file.path(wd, "log.log")))
  expect_true(res == 1)
})
phylotaR:::cleanup(wd)