Files in roryk/bcbioSinglecell
Single-Cell RNA-Seq Utilities

.Rbuildignore
.gitignore
.lintr
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/all_classes.R R/all_generics.R R/basejump.R R/bcbioSinglecell.R R/deprecated.R R/downloads.R R/internal-annotables.R R/internal-calculate_metrics.R R/internal-cellular_barcodes.R R/internal-detect.R R/internal-indrop.R R/internal-integrity.R R/internal-read_file.R R/internal-sample_dirs.R R/internal-sample_metadata_file.R R/internal-sparse_counts.R R/internal-stress_genes.R R/internal-summarized_experiment.R R/internal-tx2gene.R R/load_run.R R/methods-aggregate.R R/methods-bcbio.R R/methods-counts.R R/methods-filter_barcodes.R R/methods-interesting_groups.R R/methods-metadata_table.R R/methods-metrics.R R/methods-sample_metadata.R R/methods-select_samples.R R/methods-top_barcodes.R R/onLoad.R R/plot-barcodes.R R/plot-metrics.R R/write_counts.R README.md
bcbioSinglecell.Rproj
docs/.nojekyll
docs/LICENSE
docs/LICENSE.html
docs/authors.html
docs/downloads/_output.yaml
docs/downloads/bcbioSinglecell.bib
docs/downloads/footer.Rmd docs/downloads/header.Rmd docs/downloads/setup.R
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/aggregate.html
docs/reference/aggregate_replicates.html
docs/reference/aggregate_sparse.html
docs/reference/all_generics.html
docs/reference/annotables.html
docs/reference/barcode_metrics.html
docs/reference/barcodes.html
docs/reference/basejump.html
docs/reference/bcbio.html
docs/reference/bcbioSCDataSet-class.html
docs/reference/bcbioSCDataSet.html
docs/reference/bcbioSinglecell-package.html
docs/reference/bcbioSinglecell.html
docs/reference/calculate_metrics.html
docs/reference/cellular_barcodes.html
docs/reference/counts.html
docs/reference/create_bcbio_skeleton.html
docs/reference/create_new_project.html
docs/reference/csv_with_rownames.html
docs/reference/data_versions.html
docs/reference/deprecated.html
docs/reference/detect_hpc.html
docs/reference/detect_pipeline.html
docs/reference/downloads.html
docs/reference/ensembl_annotations.html
docs/reference/filter.html
docs/reference/filter_barcodes.html
docs/reference/filter_cellular_barcodes.html
docs/reference/generics.html
docs/reference/ieg.html
docs/reference/index.html
docs/reference/indrop.html
docs/reference/indrop_i5_index_counts.html
docs/reference/indrop_metadata.html
docs/reference/integrity.html
docs/reference/integrity_checks.html
docs/reference/interesting_groups.html
docs/reference/isr.html
docs/reference/load_cellranger.html
docs/reference/load_run.html
docs/reference/metadata_table.html
docs/reference/metrics.html
docs/reference/plot-metrics.html
docs/reference/plot_barcodes.html
docs/reference/plot_cellular_barcodes.html
docs/reference/program_versions.html
docs/reference/qc_barcodes.html
docs/reference/qc_plots.html
docs/reference/qc_plots_barcodes.html
docs/reference/qc_plots_metrics.html
docs/reference/read_10x.html
docs/reference/read_barcode_file.html
docs/reference/read_bcbio.html
docs/reference/read_counts.html
docs/reference/read_csv_with_rownames.html
docs/reference/read_file.html
docs/reference/read_metadata.html
docs/reference/reexports.html
docs/reference/references.html
docs/reference/sample_dirs.html
docs/reference/sample_metadata.html
docs/reference/sample_metadata_file.html
docs/reference/select_samples.html
docs/reference/sparse.html
docs/reference/sparse_counts.html
docs/reference/stress_genes.html
docs/reference/strip_transcript_versions.html
docs/reference/summarized_experiment.html
docs/reference/tenx.html
docs/reference/top_barcodes.html
docs/reference/tx2gene.html
docs/reference/tx2symbol.html
docs/reference/unlist_barcodes.html
docs/reference/write_counts.html
inst/rmarkdown/templates/quality_control/skeleton/skeleton.Rmd
inst/rmarkdown/templates/quality_control/template.yaml
inst/rmarkdown/templates/seurat/skeleton/skeleton.Rmd
inst/rmarkdown/templates/seurat/template.yaml
man/aggregate_replicates.Rd man/annotables.Rd man/bcbio.Rd man/bcbioSCDataSet-class.Rd man/bcbioSinglecell-package.Rd man/calculate_metrics.Rd man/cellular_barcodes.Rd man/counts.Rd man/data_versions.Rd man/deprecated.Rd man/detect_pipeline.Rd man/downloads.Rd man/filter_barcodes.Rd man/indrop.Rd man/interesting_groups.Rd man/load_run.Rd man/metadata_table.Rd man/metrics.Rd man/plot-metrics.Rd man/plot_cellular_barcodes.Rd man/program_versions.Rd man/read_file.Rd man/reexports.Rd man/sample_dirs.Rd man/sample_metadata.Rd man/sample_metadata_file.Rd man/select_samples.Rd man/sparse_counts.Rd man/stress_genes.Rd man/summarized_experiment.Rd man/top_barcodes.Rd man/tx2gene.Rd man/write_counts.Rd tests/testthat.R tests/testthat/test_lintr.R
roryk/bcbioSinglecell documentation built on July 7, 2017, 2:41 p.m.