coerce: Methods for Coercing an Object to a Class
In roryk/bcbioSinglecell: Single-Cell RNA-Seq Utilities

Description Value SingleCellExperiment to seurat seurat to SingleCellExperiment Author(s) See Also Examples

Methods for Coercing an Object to a Class

Object of new class.

`SingleCellExperiment` to `seurat`

Interally Seurat::CreateSeuratObject() is called without applying any additional filtering cutoffs, since we have already defined them during our quality control analysis. Here we are passing the raw gene-level counts of the filtered cells into a new seurat class object.

`seurat` to `SingleCellExperiment`

Super basic S4 coercion support for taking the raw counts matrix from a seurat class object and coercing to a SingleCellExperiment.

Michael Steinbaugh

Seurat::CreateSeuratObject().
Seurat::Convert().
methods::as().
methods::coerce().

Other S4 Object: bcbioSingleCell, extract, show, updateObject

# SingleCellExperiment to seurat ====
x <- as(indrops_small, "seurat")
class(x)
print(x)
# seurat to SingleCellExperiment ====
x <- as(seurat_small, "SingleCellExperiment")
class(x)
print(x)