Man pages for roryk/bcbioSinglecell
Single-Cell RNA-Seq Utilities

aggregate_replicatesAggregation methods
annotablesEnsembl annotations from annotables
bcbiobcbioSCDataSet object accessors
bcbioSCDataSet-classbcbioSCDataSet
bcbioSinglecell-packagebcbioSinglecell
calculate_metricsCalculate cellular barcode metrics summary
cellular_barcodesCellular barcode operations
countsCounts accessor
data_versionsRead data versions
deprecatedDeprecated functions
detect_pipelineDetect scRNA-seq analysis pipeline
downloadsFile downloads
filter_barcodesFilter cellular barcodes
indropRead inDrop i5 index counts
interesting_groupsInteresting groups
load_runLoad bcbio-nextgen run
metadata_tableMetadata table for knit report
metricsSample barcode metrics
plot_cellular_barcodesPlot cellular barcode distributions per sample
plot-metricsCell metrics quality control plots
program_versionsRead program versions
read_fileRead file
reexportsObjects exported from other packages
sample_dirsDetect sample directories
sample_metadataSample metadata
sample_metadata_filePrepare sample metadata from file
select_samplesSelect samples
sparse_countsRead MatrixMarket file
stress_genesStress genes
summarized_experimentPackage scRNA-Seq counts into SummarizedExperiment
top_barcodesTop barcodes
tx2geneRead transcript to gene (tx2gene) annotation file
write_countsWrite MatrixMart sparse matrix and supporting files
roryk/bcbioSinglecell documentation built on July 7, 2017, 2:41 p.m.