prepareSingleCellTemplate: Prepare Single-Cell RNA-Seq R Markdown Template

In roryk/bcbioSinglecell: Single-Cell RNA-Seq Utilities

Description

Prepare Single-Cell RNA-Seq R Markdown Template

Usage

prepareSingleCellTemplate(overwrite = FALSE)

Arguments

overwrite

logical. Should existing destination files be overwritten?

Details

By default, this function will create local copies of these files:

• _footer.Rmd

• _header.Rmd

• _output.yaml

• _setup.R

• bibliography.bib

This code is used internally by:

• bcbioRNASeq::prepareRNASeqTemplate().

• bcbioSingleCell::prepareSingleCellTemplate().

Value

Invisible logical vector indicating which files were copied.

Author(s)

Michael Steinbaugh

See Also

Other Prepare Functions: prepareSummarizedExperiment

Examples

x <- prepareSingleCellTemplate()
x

# Clean up
unlink(c(
    "_footer.Rmd",
    "_header.Rmd",
    "_output.yaml",
    "_setup.R",
    "bibliography.bib"
))

roryk/bcbioSinglecell documentation built on May 27, 2019, 10:44 p.m.