checkFeatureIds: detect whether gene expression matrix is labeled with Entrez...
In rpiskol/CMString: CMS classification using a selected set of genes that are profiled using the NanoStrin echnology
Description
Usage
Arguments
Value
Author(s)
View source: R/CMString_helperFunctions.R
Description
detect whether gene expression matrix is labeled with Entrez gene ids or Symbols
Usage
1
checkFeatureIds(sdat, minoverlapFrac = 0.25)
Arguments
sdat
gene expression matrix that will be used for CMS assignment (default: none)
minoverlapFrac
minimum overlap fraction required between rownames of expression matrix and either Entrez IDs or gene Symbols used for classification
Value
String specifying whether Entrez IDs or Symbols should be used for classification
Author(s)
Robert Piskol
rpiskol/CMString documentation built on May 24, 2019, 8:52 a.m.
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Description Usage Arguments Value Author(s)
View source: R/CMString_helperFunctions.R
Description
detect whether gene expression matrix is labeled with Entrez gene ids or Symbols
Usage
1 | checkFeatureIds(sdat, minoverlapFrac = 0.25)
|
Arguments
sdat |
gene expression matrix that will be used for CMS assignment (default: none) |
minoverlapFrac |
minimum overlap fraction required between rownames of expression matrix and either Entrez IDs or gene Symbols used for classification |
Value
String specifying whether Entrez IDs or Symbols should be used for classification
Author(s)
Robert Piskol
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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