CMString: CMS classification using a selected set of genes that are profiled using the NanoStrin echnology

extract feature (gene) names/ids for a specific CMS subtype from a cvfit object

1	getSignatureGenesPerCMSFromFit(cvfit, cms, s.stat = "lambda.min")

`cvfit`	cvfit object generated using the cv.glmnet function [default: none]
`cms`	CMS subtype for which features should be reported. This can be a string "CMS1", "CMS2", "CMS3", "CMS4" or numeric value eg. 1,2,3,4 [default: none]
`s.stat`	Value of the penalty parameter lambda for which features will be reported [default: lambda.min]

vector of feature names

Robert Piskol

rpiskol/CMString documentation built on May 24, 2019, 8:52 a.m.

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