getSignatureGenesPerCMS: extract feature (gene) names/ids for a specific CMS subtype...

In rpiskol/CMString: CMS classification using a selected set of genes that are profiled using the NanoStrin echnology

Description

extract feature (gene) names/ids for a specific CMS subtype from a cvfit file

Usage

getSignatureGenesPerCMS(cms, idtype = c("Entrez", "Symbol"),
  s.stat = "lambda.min")

Arguments

cms	CMS subtype for which features should be reported. This can be a string "CMS1", "CMS2", "CMS3", "CMS4" or numeric value eg. 1,2,3,4 [default: none]
idtype	one of "Entrez" or "Symbol" [default: Entrez]
s.stat	Value of the penalty parameter lambda for which features will be reported [default: lambda.min]

Value

vector of feature names

Author(s)

Robert Piskol

rpiskol/CMString documentation built on May 24, 2019, 8:52 a.m.