Files in rqtl/qtl2scan

Genome Scans for QTL Experiments

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

License.md

Makefile

NAMESPACE

NEWS.md R/RcppExports.R R/align_scan1_map.R R/arg_util.R R/batch_cols.R R/bayes_int.R R/calc_sdp.R R/cbind_expand.R R/cbind_scan1.R R/chr_lengths.R R/cluster_util.R R/covariates.R R/decomp_kinship.R R/dims_calc_genoprob.R R/est_herit.R R/find_peaks.R R/find_peaks_and_bayesint.R R/find_peaks_and_lodint.R R/fit1.R R/fit1_pg.R R/genoprob_col2drop.R R/genoprob_to_snpprob.R R/get_common_ids.R R/index_snps.R R/interp_map.R R/is_same.R R/kinship_util.R R/lod_int.R R/mat2strata.R R/max_scan1.R R/pick_marker_subset.R R/qtl2scan-package.R R/rbind_scan1.R R/rcbind_scan1perm.R R/scan1.R R/scan1_binary.R R/scan1_pg.R R/scan1blup.R R/scan1blup_pg.R R/scan1coef.R R/scan1coef_pg.R R/scan1perm.R R/scan1perm_pg.R R/scan1snps.R R/sqrt_weights.R R/subset_calc_genoprob.R R/subset_chr.R R/subset_ind.R R/subset_kinship.R R/subset_scan1.R R/summary_scan1perm.R R/test_util.R R/top_snps.R ReadMe.md inst/License.md inst/ReadMe.md man/batch_cols.Rd man/bayes_int.Rd man/calc_sdp.Rd man/cbind.scan1.Rd man/cbind.scan1perm.Rd man/chr_lengths.Rd man/decomp_kinship.Rd man/est_herit.Rd man/find_peaks.Rd man/fit1.Rd man/genoprob_to_snpprob.Rd man/get_common_ids.Rd man/index_snps.Rd man/interp_map.Rd man/invert_sdp.Rd man/lod_int.Rd man/mat2strata.Rd man/max_scan1.Rd man/maxlod.Rd man/pick_marker_subset.Rd man/print.summary.scan1perm.Rd man/qtl2scan-package.Rd man/rbind.scan1.Rd man/rbind.scan1perm.Rd man/scan1.Rd man/scan1blup.Rd man/scan1coef.Rd man/scan1perm.Rd man/scan1snps.Rd man/subset_scan1.Rd man/summary_scan1perm.Rd man/top_snps.Rd

src/RcppExports.cpp

src/bayes_int.cpp

src/bayes_int.h

src/binreg.cpp

src/binreg.h

src/binreg_eigen.cpp

src/binreg_eigen.h

src/binreg_weighted.cpp

src/binreg_weighted.h

src/binreg_weighted_eigen.cpp

src/binreg_weighted_eigen.h

src/brent_fmin.cpp

src/brent_fmin.h

src/debug_util.cpp

src/debug_util.h

src/find_peaks.cpp

src/find_peaks.h

src/fit1_binary.cpp

src/fit1_binary.h

src/fit1_hk.cpp

src/fit1_hk.h

src/fit1_pg.cpp

src/fit1_pg.h

src/interpolate_maps.cpp

src/interpolate_maps.h

src/linreg.cpp

src/linreg.h

src/linreg_eigen.cpp

src/linreg_eigen.h

src/lmm.cpp

src/lmm.h

src/lod_int.cpp

src/lod_int.h

src/matrix.cpp

src/matrix.h

src/pick_marker_subset.cpp

src/pick_marker_subset.h

src/r_message.cpp

src/r_message.h

src/random.cpp

src/random.h

src/scan1_binary.cpp

src/scan1_binary.h

src/scan1_hk.cpp

src/scan1_hk.h

src/scan1_pg.cpp

src/scan1_pg.h

src/scan1blup.cpp

src/scan1blup.h

src/scan1coef_binary.cpp

src/scan1coef_binary.h

src/scan1coef_hk.cpp

src/scan1coef_hk.h

src/scan1coef_pg.cpp

src/scan1coef_pg.h

src/snpprobs.cpp

src/snpprobs.h

src/util.cpp

src/util.h

tests/testthat.R tests/testthat/test-align_scan1_map.R tests/testthat/test-batch_cols.R tests/testthat/test-binreg.R tests/testthat/test-chr_lengths.R tests/testthat/test-decomp_kinship.R tests/testthat/test-drop_depcols.R tests/testthat/test-est_herit.R tests/testthat/test-find_peaks.R tests/testthat/test-fit1.R tests/testthat/test-fit1_binary.R tests/testthat/test-force_intcovar.R tests/testthat/test-genoprobs_col2drop.R tests/testthat/test-get_common_ids.R tests/testthat/test-index_snps.R tests/testthat/test-interpmap.R tests/testthat/test-is_same.R tests/testthat/test-kinship_util.R tests/testthat/test-linreg.R tests/testthat/test-lmm.R tests/testthat/test-mat2strata.R tests/testthat/test-matrix.R tests/testthat/test-max_scan1.R tests/testthat/test-pick_marker_subset.R tests/testthat/test-random.R tests/testthat/test-rcbind_scan1.R tests/testthat/test-rcbind_scan1perm.R tests/testthat/test-reduced_rank_covar_scan.R tests/testthat/test-scan1.R tests/testthat/test-scan1_binary.R tests/testthat/test-scan1_pg.R tests/testthat/test-scan1blup.R tests/testthat/test-scan1coef.R tests/testthat/test-scan1coef_binary.R tests/testthat/test-scan1coef_pg.R tests/testthat/test-scan1perm.R tests/testthat/test-scan1perm_binary.R tests/testthat/test-scan1snps.R tests/testthat/test-scanhk.R tests/testthat/test-snpprobs.R tests/testthat/test-subset_kinship.R tests/testthat/test-subset_scan1.R tests/testthat/test-summary_scan1perm.R tests/testthat/test-top_snps.R

rqtl/qtl2scan documentation built on May 28, 2019, 2:36 a.m.