mat2strata: Define strata based on rows of a matrix
In rqtl/qtl2scan: Genome Scans for QTL Experiments
Description
Usage
Arguments
Value
See Also
Examples
Description
Use the rows of a matrix to define a set of strata for a stratified permutation test
Usage
1
mat2strata(mat)
Arguments
mat
A covariate matrix, as individuals x covariates
Value
A vector of character strings: for each row of mat,
we use base::paste() with collapse="|".
See Also
qtl2geno::get_x_covar(), scan1perm()
Examples
1
2
3
4
5
library(qtl2geno)
iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2geno"))
Xcovar <- get_x_covar(iron)
perm_strata <- mat2strata(Xcovar)
rqtl/qtl2scan documentation built on May 28, 2019, 2:36 a.m.
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Description Usage Arguments Value See Also Examples
Description
Use the rows of a matrix to define a set of strata for a stratified permutation test
Usage
1 | mat2strata(mat)
|
Arguments
mat |
A covariate matrix, as individuals x covariates |
Value
A vector of character strings: for each row of mat,
we use base::paste() with collapse="|".
See Also
qtl2geno::get_x_covar(), scan1perm()
Examples
1 2 3 4 5 | library(qtl2geno)
iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2geno"))
Xcovar <- get_x_covar(iron)
perm_strata <- mat2strata(Xcovar)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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