Description Usage Arguments Value See Also Examples
Calculate the matrix of SNP genotypes from a vector of strain distribution patterns (SDPs).
1 | invert_sdp(sdp, n_strains)
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sdp |
Vector of strain distribution patterns (integers between 1 and 2^n-2 where n is the number of strains. |
n_strains |
Number of strains |
Matrix of SNP genotypes, markers x strains, coded as 1 (AA) and 3 (BB). Markers with values other than 1 or 3 are omitted, and monomorphic markers, are omitted.
1 2 | sdp <- c(m1=1, m2=12, m3=240)
invert_sdp(sdp, 8)
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