Files in rr-2/PeptideRanger
.RData
.Rbuildignore
.Rhistory
.Rproj.user/784797A7/cpp-definition-cache
.Rproj.user/784797A7/pcs/files-pane.pper
.Rproj.user/784797A7/pcs/source-pane.pper
.Rproj.user/784797A7/pcs/windowlayoutstate.pper
.Rproj.user/784797A7/pcs/workbench-pane.pper
.Rproj.user/784797A7/persistent-state
.Rproj.user/784797A7/rmd-outputs
.Rproj.user/784797A7/saved_source_markers
.Rproj.user/784797A7/sources/prop/B72089B9
.Rproj.user/784797A7/sources/prop/E3C6001B
.Rproj.user/784797A7/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.gitattributes
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
PeptideRanger.Rproj
R/INT_descriptor_calculator.R
R/data_CPTAC_ExpCounts.R
R/data_CPTAC_RF.R
R/data_ProtDB_ExpCounts.R
R/data_ProtDB_RF.R
R/data_SwissProt2018_peptidome.R
R/data_SwissProt2018_peptidomeSynth.R
R/data_tmPeptides.R
R/pkg_RFmodel_trainer.R
R/pkg_peptide_predictor.R
R/pkg_peptide_prioritizer.R
R/pkg_peptides_inReference.R
R/pkg_peptidome_generator.R
README.Rmd
README.md
data/.gitignore
data/CPTAC_exp_counts.rda
data/ProtDB_exp_counts.rda
data/RFmodel_CPTAC.rda
data/RFmodel_ProteomicsDB.rda
data/SwissProt2018_peptidome.rda
data/SwissProt2018_peptidome_synth.rda
data/tm_peptides.rda
data/workflow.JPG
inst/README_files/bootstrap-3.3.5/css/bootstrap-theme.css
inst/README_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
inst/README_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
inst/README_files/bootstrap-3.3.5/css/bootstrap.css
inst/README_files/bootstrap-3.3.5/css/bootstrap.css.map
inst/README_files/bootstrap-3.3.5/css/bootstrap.min.css
inst/README_files/bootstrap-3.3.5/css/cerulean.min.css
inst/README_files/bootstrap-3.3.5/css/cosmo.min.css
inst/README_files/bootstrap-3.3.5/css/darkly.min.css
inst/README_files/bootstrap-3.3.5/css/flatly.min.css
inst/README_files/bootstrap-3.3.5/css/fonts/Lato.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
inst/README_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
inst/README_files/bootstrap-3.3.5/css/journal.min.css
inst/README_files/bootstrap-3.3.5/css/lumen.min.css
inst/README_files/bootstrap-3.3.5/css/paper.min.css
inst/README_files/bootstrap-3.3.5/css/readable.min.css
inst/README_files/bootstrap-3.3.5/css/sandstone.min.css
inst/README_files/bootstrap-3.3.5/css/simplex.min.css
inst/README_files/bootstrap-3.3.5/css/spacelab.min.css
inst/README_files/bootstrap-3.3.5/css/united.min.css
inst/README_files/bootstrap-3.3.5/css/yeti.min.css
inst/README_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
inst/README_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
inst/README_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
inst/README_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
inst/README_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
inst/README_files/bootstrap-3.3.5/js/bootstrap.js
inst/README_files/bootstrap-3.3.5/js/bootstrap.min.js
inst/README_files/bootstrap-3.3.5/js/npm.js
inst/README_files/bootstrap-3.3.5/shim/html5shiv.min.js
inst/README_files/bootstrap-3.3.5/shim/respond.min.js
inst/README_files/figure-html/pressure-1.png
inst/README_files/highlightjs-9.12.0/default.css
inst/README_files/highlightjs-9.12.0/highlight.js
inst/README_files/highlightjs-9.12.0/textmate.css
inst/README_files/jquery-3.6.0/jquery-3.6.0.js
inst/README_files/jquery-3.6.0/jquery-3.6.0.min.js
inst/README_files/jquery-3.6.0/jquery-3.6.0.min.map
inst/README_files/navigation-1.1/codefolding.js
inst/README_files/navigation-1.1/sourceembed.js
inst/README_files/navigation-1.1/tabsets.js
man/CPTAC_exp_counts.Rd
man/ProtDB_exp_counts.Rd
man/RFmodel_CPTAC.Rd
man/RFmodel_ProteomicsDB.Rd
man/SwissProt2018_peptidome.Rd
man/SwissProt2018_peptidome_synth.Rd
man/create_peptidome.Rd
man/peptide_predictions.Rd
man/peptides_inReference.Rd
man/prioritize_peptides.Rd
man/tm_peptides.Rd
man/train_RFmodel.Rd
