R/data_SwissProt2018_peptidome.R

In rr-2/PeptideRanger:

#' Uniprot/Swiss-Prot Peptidome
#'
#' List of all unique peptides (peptidome) yielded from an in-silico tryptic digestion of a 2018/08/03 download of the human proteome from Uniprot/Swiss-Prot. This digest includes peptides yielded from 0-2 missed cleavage (MC) events and in an amino acid range of 6-25 residues.
#'
#' @format A data frame with 1952204 rows and 7 variables:
#' \describe{
#'   \item{symbol}{gene symbol of parent protein}
#'   \item{uniprot}{uniprot ID of parent protein}
#'   \item{missed_cleavages}{number of MCs that peptide resulted from}
#'   \item{sequence}{amino acid sequence of peptide}
#'   \item{start}{parent protein position of first residue in peptide}
#'   \item{end}{parent protein position of last residue in peptide}
#'   \item{size}{number of amino acid residues in peptide}

#'
#' }
#'
"SwissProt2018_peptidome"