#' Simulates island replicates with an island-wide (IW) diversity-dependent
#' constant-rate process
#'
#' @inheritParams default_params_doc
#' @return A list. The highest level of the least corresponds to each individual
#' replicate. See return for `DAISIE_sim_cr()` for details.
DAISIE_sim_cr_iw <- function(total_time,
M,
pars,
replicates,
nonoceanic_pars,
sample_freq,
hyper_pars,
area_pars,
cond,
verbose) {
island_replicates <- list()
for (rep in seq_len(replicates)) {
if (cond == 0) {
number_present <- -1
} else {
number_present <- 0
}
while (number_present < cond) {
island_replicates[[rep]] <- DAISIE_sim_core_cr(
time = total_time,
mainland_n = M,
pars = pars,
nonoceanic_pars = nonoceanic_pars,
hyper_pars = hyper_pars,
area_pars = area_pars
)
temp_island_replicates <- island_replicates[[rep]]
stac_vec <- unlist(temp_island_replicates)[which(names(unlist(temp_island_replicates)) == "taxon_list.stac")]
present <- which(stac_vec != 0)
number_present <- length(present)
}
if (verbose == TRUE) {
message("Island replicate ", rep)
}
}
island_replicates <- DAISIE_format_IW(
island_replicates = island_replicates,
time = total_time,
M = M,
sample_freq = sample_freq,
verbose = verbose)
return(island_replicates)
}
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.