scGO: scGO

In rstatistics/SCKIT: Yet Another Single-Cell Analysis Toolkit (Yeskit)

Description

GO annotation for single-cell

Usage

scGO(
  object = NULL,
  key = NULL,
  clusters = NULL,
  logFC = 0.25,
  only.pos = TRUE,
  reference = "human",
  extra = NULL
)

Arguments

object	Seurat object
key	Keyword where DGEs are stored
clusters	A vector of clusters, default clusters=NULL
logFC	A positive value to set the cutoff of logFC
only.pos	Only up-regulated genes are taken into account, default only.pos=TRUE
reference	Reference organism to set ['human' or 'mouse'], default reference = 'human'
extra	Extra slot used to fetch DGEs

Value

A list object that stored GO results.

Author(s)

rstatistics

rstatistics/SCKIT documentation built on Dec. 22, 2021, 7:18 p.m.