scGO: scGO

Description Usage Arguments Value Author(s)

View source: R/scGO.R

Description

GO annotation for single-cell

Usage

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scGO(
  object = NULL,
  key = NULL,
  clusters = NULL,
  logFC = 0.25,
  only.pos = TRUE,
  reference = "human",
  extra = NULL
)

Arguments

object

Seurat object

key

Keyword where DGEs are stored

clusters

A vector of clusters, default clusters=NULL

logFC

A positive value to set the cutoff of logFC

only.pos

Only up-regulated genes are taken into account, default only.pos=TRUE

reference

Reference organism to set ['human' or 'mouse'], default reference = 'human'

extra

Extra slot used to fetch DGEs

Value

A list object that stored GO results.

Author(s)

rstatistics


rstatistics/SCKIT documentation built on Dec. 22, 2021, 7:18 p.m.