scIntegrate: scIntegrate
In rstatistics/SCKIT: Yet Another Single-Cell Analysis Toolkit (Yeskit)
Description
Usage
Arguments
Value
Author(s)
Description
Integrate seurat objects into one
Usage
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scIntegrate(
object.list = NULL,
object.names = NULL,
nVariable = 2000,
nPC = 30,
res = 0.5,
batch.rm = "harmony"
)
Arguments
object.list
A list of seurat objects
object.names
An array of seurat object names
nVariable
Number of features to select as top variable features
nPC
Number of PCs to use
res
Resolution parameter to set. Default res=0.5
batch.rm
Remove batch effect with 'seurat' or 'harmony'.
Default batch.rm='harmony'
Value
Seurat object.
Author(s)
rstatistics
rstatistics/SCKIT documentation built on Dec. 22, 2021, 7:18 p.m.
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Description Usage Arguments Value Author(s)
Description
Integrate seurat objects into one
Usage
1 2 3 4 5 6 7 8 | scIntegrate(
object.list = NULL,
object.names = NULL,
nVariable = 2000,
nPC = 30,
res = 0.5,
batch.rm = "harmony"
)
|
Arguments
object.list |
A list of seurat objects |
object.names |
An array of seurat object names |
nVariable |
Number of features to select as top variable features |
nPC |
Number of PCs to use |
res |
Resolution parameter to set. Default res=0.5 |
batch.rm |
Remove batch effect with 'seurat' or 'harmony'. Default batch.rm='harmony' |
Value
Seurat object.
Author(s)
rstatistics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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