scVizMeta: scVizMeta function

Description Usage Arguments Details Value Author(s)

View source: R/scVizMeta.R

Description

Visualize MetaData in low dimensional embedding

Usage

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
scVizMeta(
  object = NULL,
  signature = NULL,
  pt.size = NULL,
  reduction = NULL,
  title = NULL,
  split.by = NULL,
  ncol = NULL,
  raster = TRUE,
  palette = "YlOrRd",
  interval = c(Max = 1e+05, Hyper = 10000, Abundant = 1000, Large = 500, Medium = 100,
    Small = 10, Single = 1, None = 0)
)

Arguments

object

Seurat object

signature

Name of one gene set

pt.size

Adjust point size to plot, default pt.size=0.5

reduction

Which dimensionality reduction to use, default is 'umap'

title

Text for the plot title, default title=NULL

split.by

Name of a metadata column to split plot by

ncol

Number of columns for display the plots

raster

Convert points to raster format, default is TRUE

palette

A palette name from RColorBrewer package

interval

set MetaData intervals to plot

Details

visualize data from MetaData slot

Value

ggplot2 object

Author(s)

Wei Zhang


rstatistics/SCKIT documentation built on Dec. 22, 2021, 7:18 p.m.