scVizMeta: scVizMeta function

In rstatistics/SCKIT: Yet Another Single-Cell Analysis Toolkit (Yeskit)

Description

Visualize MetaData in low dimensional embedding

Usage

scVizMeta(
  object = NULL,
  signature = NULL,
  pt.size = NULL,
  reduction = NULL,
  title = NULL,
  split.by = NULL,
  ncol = NULL,
  raster = TRUE,
  palette = "YlOrRd",
  interval = c(Max = 1e+05, Hyper = 10000, Abundant = 1000, Large = 500, Medium = 100,
    Small = 10, Single = 1, None = 0)
)

Arguments

object	Seurat object
signature	Name of one gene set
pt.size	Adjust point size to plot, default pt.size=0.5
reduction	Which dimensionality reduction to use, default is 'umap'
title	Text for the plot title, default title=NULL
split.by	Name of a metadata column to split plot by
ncol	Number of columns for display the plots
raster	Convert points to raster format, default is TRUE
palette	A palette name from RColorBrewer package
interval	set MetaData intervals to plot

Details

visualize data from MetaData slot

Value

ggplot2 object

Author(s)

Wei Zhang

rstatistics/SCKIT documentation built on Dec. 22, 2021, 7:18 p.m.