summary_rows: Add group-wise summary rows using aggregation functions

In rstudio/gt: Easily Create Presentation-Ready Display Tables

Add group-wise summary rows using aggregation functions

Description

Add summary rows to one or more row groups by using the table data and any suitable aggregation functions. Multiple summary rows can be added for selected groups via expressions given to fns. You can selectively format the values in the resulting summary cells by use of formatting expressions in fmt.

Usage

summary_rows(
  data,
  groups = everything(),
  columns = everything(),
  fns = NULL,
  fmt = NULL,
  side = c("bottom", "top"),
  missing_text = "---",
  formatter = NULL,
  ...
)

Arguments

data	The gt table data object ⁠obj:<gt_tbl>⁠ // required This is the gt table object that is commonly created through use of the gt() function.
groups	Specification of row group IDs ⁠<row-group-targeting expression>⁠ // default: everything() The row groups to which targeting operations are constrained. Can either be a series of row group ID values provided in c() or a select helper function (e.g. starts_with(), ends_with(), contains(), matches(), num_range(), and everything()). By default this is set to everything(), which means that all available groups will obtain summary rows.
columns	Columns to target ⁠<column-targeting expression>⁠ // default: everything() The columns for which the summaries should be calculated. Can either be a series of column names provided in c(), a vector of column indices, or a select helper function (e.g. starts_with(), ends_with(), contains(), matches(), num_range(), and everything()).
fns	Aggregation Expressions ⁠<expression|list of expressions>⁠ Functions used for aggregations. This can include base functions like mean, min, max, median, sd, or sum or any other user-defined aggregation function. Multiple functions, each of which would generate a different row, are to be supplied within a list(). We can specify the functions by use of function names in quotes (e.g., "sum"), as bare functions (e.g., sum), or in formula form (e.g., minimum ~ min(.)) where the LHS could be used to supply the summary row label and ID values. More information on this can be found in the Aggregation expressions for fns section.
fmt	Formatting expressions ⁠<expression|list of expressions>⁠ Formatting expressions in formula form. The RHS of ~ should contain a formatting call (e.g., ⁠~ fmt_number(., decimals = 3, use_seps = FALSE⁠). Optionally, the LHS could contain a group-targeting expression (e.g., "group_a" ~ fmt_number(.)). More information on this can be found in the Formatting expressions for fmt section.
side	Side used for placement of summary rows ⁠singl-kw:[bottom|top]⁠ // default: "bottom" Should the summary rows be placed at the "bottom" (the default) or the "top" of the row group?
missing_text	Replacement text for NA values ⁠scalar<character>⁠ // default: "---" The text to be used in place of NA values in summary cells with no data outputs.
formatter	Deprecated Formatting function ⁠<expression>⁠ Deprecated, please use fmt instead. This was previously used as a way to input a formatting function name, which could be any of the ⁠fmt_*()⁠ functions available in the package (e.g., fmt_number(), fmt_percent(), etc.), or a custom function using fmt(). The options of a formatter can be accessed through ....
...	Deprecated Formatting arguments ⁠<Named arguments>⁠ Deprecated (along with formatter) but otherwise used for argument values for a formatting function supplied in formatter. For example, if using formatter = fmt_number, options such as decimals = 1, use_seps = FALSE, and the like can be used here.

Value

An object of class gt_tbl.

Using columns to target column data for aggregation

Targeting of column data for which aggregates should be generated is done through the columns argument. We can declare column names in c() (with bare column names or names in quotes) or we can use tidyselect-style expressions. This can be as basic as supplying a select helper like starts_with(), or, providing a more complex incantation like

where(~ is.numeric(.x) & max(.x, na.rm = TRUE) > 1E6)

which targets numeric columns that have a maximum value greater than 1,000,000 (excluding any NAs from consideration).

By default all columns are selected (with the everything() default). This default may be not what's needed unless all columns can undergo useful aggregation by expressions supplied in fns.

Aggregation expressions for fns

There are a number of ways to express how an aggregation should work for each summary row. In addition to that, we have the ability to pass important information such as the summary row ID value and its label (the former necessary for targeting within tab_style() or tab_footnote() and the latter used for display in the rendered table). Here are a number of instructive examples for how to supply such expressions.

Double-sided formula with everything supplied

We can be explicit and provide a double-sided formula (in the form ⁠<LHS> ~ <RHS>⁠) that expresses everything about a summary row. That is, it has an aggregation expression (where . represents the data in the focused column). Here's an example:

list(id = "minimum", label = "min") ~ min(., na.rm = TRUE)

The left side (the list) contains named elements that identify the id and label for the summary row. The right side has an expression for obtaining a minimum value (dropping NA values in the calculation).

The list() can be replaced with c() but the advantage of a list is allowing the use of the md() and html() helper functions. The above example can be written as:

list(id = "minimum", label = md("**Minimum**")) ~ min(., na.rm = TRUE)

and we can have that label value interpreted as Markdown text.

Function names in quotes

With fns = "min" we get the equivalent of the fuller expression:

list(id = "min", label = "min") ~ min(., na.rm = TRUE)

For sake of convenience, common aggregation functions with the na.rm argument will be rewritten with the na.rm = TRUE option. These functions are: "min", "max", "mean", "median", "sd", and "sum".

Should you need to specify multiple aggregation functions in this way (giving you multiple summary rows), use c() or list().

RHS formula expressions

With fns = ~ min(.) or fns = list(~ min(.)), gt will use the function name as the id and label. The expansion of this shorthand to full form looks like this:

list(id = "min", label = "min") ~ min(.)

The RHS expression is kept as written and the name portion is both the id and the label.

Named vector or list with RHS formula expression

Using fns = c(minimum = ~ min(.)) or fns = list(minimum = ~ min(.)) expands to this:

list(id = "minimum", label = "minimum") ~ min(.)

Unnamed vector or list with RHS formula expression

With fns = c("minimum", "min") ~ min(.) or fns = list("minimum", "min") ~ min(.) the LHS contains the label and id values and, importantly, the order is label first and id second. This can be rewritten as:

list(id = "min", label = "minimum") ~ min(.)

If the vector or list is partially named, gt has enough to go on to disambiguate the unnamed element. So with fns = c("minimum", label = "min") ~ min(.), "min" is indeed the label and "minimum" is taken as the id value.

A fully named list with three specific elements

We can avoid using a formula if we are satisfied with the default options of a function (except some of those functions with the na.rm options, see above). Instead, a list with the named elements id, label, and fn could be used. It can look like this:

fns = list(id = "mean_id", label = "average", fn = "mean")

which translates to

list(id = "mean_id", label = "average") ~ mean(., na.rm = TRUE)

Formatting expressions for fmt

Given that we are generating new data in a table, we might also want to take the opportunity to format those new values right away. We can do this in the fmt argument, either with a single expression or a number of them in a list.

Formatting cells across all groups

We can supply a one-sided (RHS only) or two-sided expression (targeting groups) to fmt, and, several can be provided in a list. The RHS will always contain an expression that uses a formatting function (e.g., fmt_number(), fmt_currency(), etc.) and it must contain an initial . that stands for the data object. If performing numeric formatting on all columns in the new summary rows, it might look something like this:

fmt = ~ fmt_number(., decimals = 1, use_seps = FALSE)

We can use the columns and rows arguments that are available in every formatting function. This allows us to format only a subset of columns or rows. Summary rows can be targeted by using their ID values and these are settable within expressions given to fns (see the Aggregation expressions for fns section for details on this). Here's an example with hypothetical column and row names:

fmt = ~ fmt_number(., columns = num, rows = "mean", decimals = 3)

Formatting cells in specific groups

A two-sided expression is needed for targeting the formatting directives to specific summary row groups. In this format, the LHS should contain an expression that resolves to a set of available groups. We can use a single row group name in quotes, several of those in a vector, or a select helper expression like starts_with() or matches().

In a situation where summary rows were generated across the row groups named "group_1", "group_2", and "group_3", we could format all summary cells in "group_2" with the following:

fmt = "group_2" ~ fmt_number(., decimals = 1, use_seps = FALSE)

If you wanted to target the latter two groups, this can be done:

fmt = matches("2|3") ~ fmt_number(., decimals = 1, use_seps = FALSE)

Should you need to target a single cell, the LHS expression for group targeting could be paired with single values for columns and rows on the RHS formatting expression. Like this:

fmt = "group_1" ~ fmt_number(., columns = num, rows = "mean")

Extraction of summary rows

Should we need to obtain the summary data for external purposes, extract_summary() can be used with a gt_tbl object where summary rows were added via summary_rows() or grand_summary_rows().

Examples

Use a modified version of sp500 dataset to create a gt table with row groups and row labels. Create the summary rows labeled min, max, and avg by row group (where each each row group is a week number) with summary_rows().

sp500 |>
  dplyr::filter(date >= "2015-01-05" & date <= "2015-01-16") |>
  dplyr::arrange(date) |>
  dplyr::mutate(week = paste0("W", strftime(date, format = "%V"))) |>
  dplyr::select(-adj_close, -volume) |>
  gt(
    rowname_col = "date",
    groupname_col = "week"
  ) |>
  summary_rows(
    fns = list(
      "min",
      "max",
      list(label = "avg", fn = "mean")
    ),
    fmt = ~ fmt_number(., use_seps = FALSE)
  )

Using the countrypops dataset, let's process that a bit before giving it to gt. We can create a summary rows with totals that appear at the top of each row group (with side = "top"). We can define the aggregation with a list that contains parameters for the summary row label (md("**ALL**")), the shared ID value of those rows across groups ("totals"), and the aggregation function (expressed as "sum", which gt recognizes as the sum() function). To top it all off, we'll add background fills to the summary rows with tab_style().

countrypops |>
  dplyr::filter(
    country_code_2 %in% c("BR", "RU", "IN", "CN", "FR", "DE", "IT", "GB")
  ) |>
  dplyr::filter(year %% 10 == 0) |>
  dplyr::select(country_name, year, population) |>
  tidyr::pivot_wider(names_from = year, values_from = population) |>
  gt(rowname_col = "country_name") |>
  tab_row_group(
    label = md("*BRIC*"),
    rows = c("Brazil", "Russia", "India", "China"),
    id = "bric"
  ) |>
  tab_row_group(
    label = md("*Big Four*"),
    rows = c("France", "Germany", "Italy", "United Kingdom"),
    id = "big4"
  ) |>
  row_group_order(groups = c("bric", "big4")) |>
  tab_stub_indent(rows = everything()) |>
  tab_header(title = "Populations of the BRIC and Big Four Countries") |>
  tab_spanner(columns = everything(), label = "Year") |>
  fmt_number(n_sigfig = 3, suffixing = TRUE) |>
  summary_rows(
    fns =  list(label = md("**ALL**"), id = "totals", fn = "sum"),
    fmt = ~ fmt_number(., n_sigfig = 3, suffixing = TRUE),
    side = "top"
  ) |>
  tab_style(
    locations = cells_summary(),
    style = cell_fill(color = "lightblue" |> adjust_luminance(steps = +1))
  )

Function ID

6-1

Function Introduced

v0.2.0.5 (March 31, 2020)

See Also

Other row addition/modification functions: grand_summary_rows(), row_group_order(), rows_add()

rstudio/gt documentation built on Nov. 2, 2024, 5:53 p.m.