Man pages for rusher321/microbiotaPair
An R Package for Simplified Microbiome Analysis Workflows on Intervention Study
| alpha_diversity | Alpha diversity |
| compare_two | Wilcoxon Sign-Rank Test |
| comtaxTop | comtaxTop |
| CvLasso | CvLasso select feature & predict performance using lasso... |
| data2phyloseq | data2phyloseq |
| filterEx | filterEx |
| filterPer | filterPer |
| gee_test | Generalized Estimating Equations |
| ggiNEXT | Alpha diversity ggplot2 extension for an iNEXT object this... |
| hill_number | hill_number |
| LassoFeatruePlot | LassoFeaturePlot plot the no-zeor lasso score of feature |
| mantel_test | mantel_test |
| multiplot | multiplot |
| network_sta | Network toplogy |
| network_tran | Network_tran Transform the matrix to ggraph structure |
| ordination | Ordination and beta dispersion |
| pair_foldchange | pair_foldchange The fold change value between the pair... |
| pairNet | pairNet Pair Networt for a specific species on 2 time point |
| PcorPair | pairwise partial correlations for Pair Study |
| perfPlot | perfPlot performance of randomForesttwo |
| PERMANOVA1 | Permutational Multivariate Analysis of Variance Using... |
| plot_alpha_diversity | Plot alpha diversity |
| plot_centrel | plot_centrel |
| plot_ordination | Ordination plots |
| plot_pair_distance | plot_pair_distance |
| randomForestTwo | randomForestTwo two class randomforest model |
| randomForestTworobust | randomForestTworobust |
| repeatNetwork | repeatNetwork to restruct the robust network using the... |
| rocPlot2 | rocPlot2 |
| simplenet | simpleNet |
| sparccNet | sparcc network |
| sparCCnetwork | sparCCnetwork |
| two_part_compare | two part compare two part (paired test & McNemar’s Chi-Square... |
