alpha_diversity: Alpha diversity
In rusher321/microbiotaPair: An R Package for Simplified Microbiome Analysis Workflows on Intervention Study
View source: R/alpha_diversity.R
alpha_diversity R Documentation
Alpha diversity
Description
The alpha_diversity aims to calculate the global indicators of the ecosystem state
Usage
alpha_diversity(physeq, method)
Arguments
method
(Required). A list of character strings specifying method to be used to calculate for alpha diversity
in the data. Available methods are: "observed", "chao1", "simpson", "shannon" and "evenness" .
physeq
(Required). A phyloseq object containing merged information of abundance,
sample data including the measured variables and categorical information of the samples.
Details
10/01/2020 ShenZhen China
Value
It returns a data frame of diversity measure and corresponding indices/methods
Author(s)
(s) Hua Zou, Huahui Ren huahui.ren@bio.ku.dk
Examples
data(physeq_data)
method <- "all"
alpha_diversity(physeq_data, method)
rusher321/microbiotaPair documentation built on July 24, 2024, 8:40 p.m.
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View source: R/alpha_diversity.R
| alpha_diversity | R Documentation |
Alpha diversity
Description
The alpha_diversity aims to calculate the global indicators of the ecosystem state
Usage
alpha_diversity(physeq, method)
Arguments
method |
(Required). A list of character strings specifying |
physeq |
(Required). A |
Details
10/01/2020 ShenZhen China
Value
It returns a data frame of diversity measure and corresponding indices/methods
Author(s)
(s) Hua Zou, Huahui Ren huahui.ren@bio.ku.dk
Examples
data(physeq_data)
method <- "all"
alpha_diversity(physeq_data, method)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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