pairNet: pairNet Pair Networt for a specific species on 2 time point
In rusher321/microbiotaPair: An R Package for Simplified Microbiome Analysis Workflows on Intervention Study
pairNet R Documentation
pairNet
Pair Networt for a specific species on 2 time point
Description
pairNet
Pair Networt for a specific species on 2 time point
Usage
pairNet(microbiota, metadata, cutoff, species, name, ...)
Arguments
microbiota
a data.frame object, species profile, row is sample
metadata
a data.frame object, metadata table, row is sample
cutoff
numberic, the sparcc coefficient of species-species indicate
the cutoff of eage
species
charater, species names, eg "Vibrio_harveyi"
name
charater, provida a name for the specific species of treatment
Value
matrix
rusher321/microbiotaPair documentation built on July 24, 2024, 8:40 p.m.
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| pairNet | R Documentation |
pairNet Pair Networt for a specific species on 2 time point
Description
pairNet Pair Networt for a specific species on 2 time point
Usage
pairNet(microbiota, metadata, cutoff, species, name, ...)
Arguments
microbiota |
a data.frame object, species profile, row is sample |
metadata |
a data.frame object, metadata table, row is sample |
cutoff |
numberic, the sparcc coefficient of species-species indicate the cutoff of eage |
species |
charater, species names, eg "Vibrio_harveyi" |
name |
charater, provida a name for the specific species of treatment |
Value
matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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