sparccNet: sparcc network
In rusher321/microbiotaPair: An R Package for Simplified Microbiome Analysis Workflows on Intervention Study
sparccNet R Documentation
sparcc network
Description
sparcc network
Usage
sparccNet(dat = microbiota, cutoff = 0.3, main = "test", count = F)
Arguments
dat
data.frame or matrix, row is sample ID
cutoff
numberic, the sparcc coefficient of species-species indicate
the cutoff of eage
main
character, the network title
count
logistic, indicated the microbiota data is count of relative abundance
layout
character, the paremeter from the igraph indicated the network layout
...
Value
figure
rusher321/microbiotaPair documentation built on July 24, 2024, 8:40 p.m.
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| sparccNet | R Documentation |
sparcc network
Description
sparcc network
Usage
sparccNet(dat = microbiota, cutoff = 0.3, main = "test", count = F)
Arguments
dat |
data.frame or matrix, row is sample ID |
cutoff |
numberic, the sparcc coefficient of species-species indicate the cutoff of eage |
main |
character, the network title |
count |
logistic, indicated the microbiota data is count of relative abundance |
layout |
character, the paremeter from the igraph indicated the network layout |
... |
Value
figure
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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