Man pages for russHyde/coxpresdbr
Parses and Summarises Data from coxpresdb.jp
| cluster_by_coex_partnership | Obtain a graph containing clusters of genes, where known... |
| compute_cor | Compute the (partial) correlation between columns of the... |
| CoxpresDbAccessor | Constructor for the CoxpresDbAccessor class - Use this to... |
| CoxpresDbAccessor-class | Template for 'CoxpresDbAccessor' class |
| CoxpresDbArchiveAccessor-class | Constructor for the concrete class 'CoxpresDbArchiveAccessor' |
| CoxpresDbDataframeAccessor-class | Constructor for the concrete class... |
| CoxpresDbPartners-class | Template for 'CoxpresDbPartners' class |
| dot-filter_coex_partners | Function to filter the contents of a 'coxpresdb.jp'... |
| dot-is_coxpresdb_archive | Checks whether a provided file-path points to a valid... |
| dot-is_gene_statistics_df | Checks that a User-provided gene_statistics data-frame... |
| dot-validity_coxpresdb_partners | Validity checker for 'CoxpresDbPartners' objects |
| evaluate_coex_partners | Summarise whether the coexpression partners of each... |
| get_all_coex_partners-character-CoxpresDbArchiveAccessor-method | Import all the coexpression partner data for a set of genes... |
| get_coex_partners | Returns the coexpression partners of a given set of genes |
| get_file_paths | Obtains all the file-paths that are present in a CoxpresDb... |
| get_gene_ids | Generic method for getting gene identifiers. |
| get_gene_ids-CoxpresDbArchiveAccessor-method | Imports the gene identifiers that are represented within a... |
| get_gene_ids-CoxpresDbDataframeAccessor-method | Imports the gene identifiers that are represented within a... |
| get_gene_universe | Generic function for returning the set of all genes... |
| get_gene_universe-CoxpresDbPartners-method | Obtains the set of all genes considered in the analysis of... |
| get_source_genes | Generic function for obtaining the set of source genes for... |
| get_source_genes-CoxpresDbPartners-method | Obtains the set of source genes for which partner genes were... |
| get_source_ids | Generic method for getting source-gene identifiers. |
| get_source_ids-CoxpresDbArchiveAccessor-method | Imports the source-gene identifiers that are represented... |
| get_source_ids-CoxpresDbDataframeAccessor-method | Imports the source gene identifiers that are represented... |
| run_coex_partner_workflow | Extract partners of a set of gene-ids, generate summary... |
