Function to filter the contents of a 'coxpresdb.jp' gene-coexpression dataset
1 | .filter_coex_partners(coex_df, gene_universe, n_partners, mr_threshold)
|
coex_df |
A dataframe containing coexpression data. Should
contain columns |
gene_universe |
The genes in the dataframe should be filtered
to ensure they are all present in this set. Note that both the entries in
|
n_partners |
The maximum number of partners to return for the
source gene(s) in |
mr_threshold |
All gene-pairs in the returned dataset will have a mutual-rank of at most this value. |
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