cluster_by_coex_partnership: Obtain a graph containing clusters of genes, where known...

Description Usage Arguments

View source: R/coxpresdbr_stats.R

Description

Obtain a graph containing clusters of genes, where known co-expression partners are linked if their expression is consistent in the user's data

Usage

1
cluster_by_coex_partnership(coex_partners, drop_disparities = TRUE)

Arguments

coex_partners

A CoxpresDbPartners object containing gene-statistics from the user's experiment and gene-gene associations between highly correlated partners as derived from 'coxpresdb.jp'.

drop_disparities

Boolean. Should the clustering of known coexpression partners disregard associations between genes that are differentially expressed in the opposite direction from each other? Default: TRUE.


russHyde/coxpresdbr documentation built on Dec. 24, 2019, 11:59 a.m.