CoxpresDbArchiveAccessor-class: Constructor for the concrete class 'CoxpresDbArchiveAccessor'

Description Arguments

Description

This is a datastructure that stores the location of a CoxpresDb archive and the relative paths of all subfiles within that archive. If the archive is compressed, on construction of CoxpresDbAccessor a temporary copy of the uncompressed archive is constructed. So construction may take a couple of minutes depending on the size of the archive. You may want to wrap a call to this function in a future() block.

Arguments

archive

The path to a CoxpresDb archive (either .tar.bz2 or .tar).

archive_uncompressed

The path to an uncompressed copy of the CoxpresDb archive.

file_paths

The relative paths of all file present in subdirectories of the archive. As a data-frame of 'gene_id' -> 'file_path' pairs.


russHyde/coxpresdbr documentation built on Dec. 24, 2019, 11:59 a.m.