Files in russHyde/miiq

Microarrays Are Awesome: Get Them Analysed HERE!

LICENSE.md R/deprecated.R R/diffex_classes.R R/diffex_functions.R R/diffex_methods.R R/download_classes.R R/download_functions.R R/download_methods.R R/filter_functions.R R/id_mapping.R R/import_classes.R R/import_functions.R R/import_methods.R R/list_manipulation.R R/microarray_classes.R R/microarray_functions.R R/normalisation_functions.R R/preprocess_classes.R R/preprocess_functions.R R/preprocess_methods.R R/utils.R R/vector_manipulation.R README.Rmd README.md man/DiffexConfig-class.Rd man/DiffexConfig.Rd man/MicroarrayDownloadConfig-class.Rd man/MicroarrayDownloadConfig.Rd man/MicroarrayImportConfig-class.Rd man/MicroarrayImportConfig.Rd man/MicroarrayPreprocessConfig-class.Rd man/MicroarrayPreprocessConfig.Rd man/add_entrez_ids_to_esets.Rd man/add_gpl_to_eset.Rd man/build_eset_normaliser.Rd man/check_if_pretransformed_eset.Rd man/contrast_builder.Rd man/design_builder.Rd man/dl_aryx_raw.Rd man/dl_gds_to_gpl.Rd man/dl_geo_processed.Rd man/dl_geo_raw.Rd man/dot-get_from_env.Rd man/dot-make_gpl_filename.Rd man/dot-make_gpl_url.Rd man/download_gpl_annotations.Rd man/eset_limma_dataset-class.Rd man/eset_limma_dataset.Rd man/filter_and_transform_eset.Rd man/geo_id_to_accession.Rd man/get_or_else.Rd man/get_refseq_colnames.Rd man/get_refseq_column.Rd man/gld_fnBuilder_exptDesign.Rd man/gld_fnBuilder_keepSample.Rd man/gld_fnDefault_esetAnnotation.Rd man/gld_fnDefault_exptDesign.Rd man/gld_fnDefault_keepProbe.Rd man/gld_fnDefault_keepSample.Rd man/gld_fnDefault_transformAndProbeFilter.Rd man/has_refseq_column.Rd man/import_aryx_affy_raw.Rd man/import_geo_affy_raw.Rd man/import_geo_processed.Rd man/import_gpl.Rd man/inf_omit.Rd man/keep_all_entrez_probes.Rd man/keep_all_probes.Rd man/keep_all_samples.Rd man/keep_probe_fn.Rd man/limma_workflow.Rd man/meta-diffex_classes-NULL-function.Rd man/meta-extdata_download_classes-NULL-function.Rd man/meta-extdata_import_classes-NULL-function.Rd man/multisymbol_to_entrez_ids.Rd man/na_inf_omit.Rd man/normalise_processed_eset.Rd man/normalise_raw_affy_eset.Rd man/nullFunction.Rd man/paste_gene_symbols.Rd man/preprocess_eset_workflow.Rd man/run_diffex_workflow-methods.Rd man/run_download_workflow.Rd man/run_import_workflow-methods.Rd man/run_preprocess_workflow-methods.Rd man/swissprot_column_to_refseq.Rd man/symbol_to_entrez_id.Rd random/dev_setup.R tests/testthat.R tests/testthat/helpers.R tests/testthat/test-diffex_classses.R tests/testthat/test-diffex_functions.R tests/testthat/test-diffex_methods.R tests/testthat/test-download_classes.R tests/testthat/test-download_functions.R tests/testthat/test-download_methods.R tests/testthat/test-filter_functions.R tests/testthat/test-id_mapping.R tests/testthat/test-import_classes.R tests/testthat/test-import_functions.R tests/testthat/test-import_methods.R tests/testthat/test-list_manipulation.R tests/testthat/test-microarray_classes.R tests/testthat/test-microarray_functions.R tests/testthat/test-normalisation_functions.R tests/testthat/test-preprocess_classes.R tests/testthat/test-preprocess_functions.R tests/testthat/test-utils.R tests/testthat/test-vector_manipulation.R