multisymbol_to_entrez_ids: multisymbol_to_entrez_ids

Description Usage Arguments

View source: R/id_mapping.R

Description

A function to map a vector of gene symbols to Entrez gene ids. The input may contain "multiple|joined|symbols", and if it does, the output for that entry will contain a "joined|string|of|ids" containing all of the unique values that any of the input symbols mapped to See symbol_to_entrez_id for further details

Usage

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multisymbol_to_entrez_ids(gene_symbols = character(0),
  symbol_type = "SYMBOL", entrezgene_db = NULL,
  split_character = "\\|", collapse_character = "|", quiet = TRUE)

Arguments

gene_symbols

vector of gene_symbols of a single type.

symbol_type

type of the gene_symbols (eg, Refseq).

entrezgene_db

database for mapping gene_symbols to entrez.ids.

split_character

character string for splitting up the symbols if any of the input entries contains more than one symbol.

collapse_character

character for collapsing entrez ids.

quiet

BOOLEAN should dplyr progress bar be suppressed (sideeffect).


russHyde/miiq documentation built on Dec. 25, 2019, 10:56 a.m.