compute_fitted_values: Obtain fitted values for a given combination of design...

In russHyde/reeq: Provides Some Helper Functions For RNA-Seq Analysis / IO

Description

Obtain fitted values for a given combination of design coefficients

Usage

compute_fitted_values(x, contrasts, center = FALSE)

Arguments

x	A fit from running an edgeR pipeline, eg, a DGEGLM object.
contrasts	A matrix defining linear combination of design coefficients. eg, this might define the combination of design coefs that gives the fitted value for a particular (set of) treatment group. This should be specified in the format of a contrasts matrix (a row for each design coefficient, a column for each computed value). If rownames are specified, they should be identical to those used in the corresponding design matrix.
center	Boolean: should the mean value be subtracted from each row before returning the results matrix?

russHyde/reeq documentation built on March 10, 2020, 5:36 a.m.