get_gc_percent: Obtain the GC percentage for a set of genes from a biomaRt...
In russHyde/reeq: Provides Some Helper Functions For RNA-Seq Analysis / IO
View source: R/feature_annotation.R
Description
Obtain the GC percentage for a set of genes from a biomaRt database
Usage
1
2
get_gc_percent(feature_ids, mart, feature_column = "ensembl_gene_id",
gc_column = "percentage_gc_content")
Arguments
feature_ids
A set of gene IDs.
mart
A biomaRt 'Mart' Dataset object.
feature_column
The column of the 'mart' dataset that
contains IDs of the same type as the 'feature_ids'.
gc_column
The column of the 'mart' dataset that contains
the GC percentage values for the genes / features.
russHyde/reeq documentation built on March 10, 2020, 5:36 a.m.
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View source: R/feature_annotation.R
Description
Obtain the GC percentage for a set of genes from a biomaRt database
Usage
1 2 | get_gc_percent(feature_ids, mart, feature_column = "ensembl_gene_id",
gc_column = "percentage_gc_content")
|
Arguments
feature_ids |
A set of gene IDs. |
mart |
A biomaRt 'Mart' Dataset object. |
feature_column |
The column of the 'mart' dataset that contains IDs of the same type as the 'feature_ids'. |
gc_column |
The column of the 'mart' dataset that contains the GC percentage values for the genes / features. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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