which_k_covered_across_samples: which_k_covered_across_samples
In russHyde/reeq: Provides Some Helper Functions For RNA-Seq Analysis / IO
Description
Returns the row indices for those rows in a matrix where the sum of the
entries in that row is '>= k'. For example, in RNA-Seq, this returns the
index of those features that have a coverage '>= k' when summed across all
samples.
Usage
1
which_k_covered_across_samples(mat, k = 2 * ncol(mat))
Arguments
mat
Either a matrix, data.frame, DGEList or
ExpressionSet.
k
A single number.
russHyde/reeq documentation built on March 10, 2020, 5:36 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Returns the row indices for those rows in a matrix where the sum of the entries in that row is '>= k'. For example, in RNA-Seq, this returns the index of those features that have a coverage '>= k' when summed across all samples.
Usage
1 | which_k_covered_across_samples(mat, k = 2 * ncol(mat))
|
Arguments
mat |
Either a matrix, data.frame, DGEList or ExpressionSet. |
k |
A single number. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.