get_sig_test_summary: get_sig_test_summary
In russHyde/reeq: Provides Some Helper Functions For RNA-Seq Analysis / IO
View source: R/sig_test_summary-class.R
Description
get_sig_test_summary
Usage
1
2
get_sig_test_summary(fit, testable_features = row.names(fit), contrast,
p_threshold = 0.05)
Arguments
fit
A DGEGLM from a edgeR model fit.
testable_features
Which rows of the DGEGLM should be
considered?
contrast
A matrix or vector defining the contrasts over
which the LRT test should summarise.
p_threshold
A single float given the FDR threshold under
which a given feature is considered 'significant'.
russHyde/reeq documentation built on March 10, 2020, 5:36 a.m.
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View source: R/sig_test_summary-class.R
Description
get_sig_test_summary
Usage
1 2 | get_sig_test_summary(fit, testable_features = row.names(fit), contrast,
p_threshold = 0.05)
|
Arguments
fit |
A DGEGLM from a edgeR model fit. |
testable_features |
Which rows of the DGEGLM should be considered? |
contrast |
A matrix or vector defining the contrasts over which the LRT test should summarise. |
p_threshold |
A single float given the FDR threshold under which a given feature is considered 'significant'. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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