export.sig_test_summary: Export a 'sig_test_summary' object to files

In russHyde/reeq: Provides Some Helper Functions For RNA-Seq Analysis / IO

Description

Write the (unfiltered) top-table and significant gene lists from a 'sig_test_summary' object to some files. The file format is '<output_dir>/<test_name>.top_tags.tsv' or '<output_dir>/<test_name>.sig_features.<p_threshold>.tsv', where the p-value threshold is obtained from inside the 'sig_test_summary' object and is formatted to 4 decimal places.

Usage

## S3 method for class 'sig_test_summary'
export(x, output_dir, test_name, ...)

Arguments

x	Some datastructure. Typically a 'sig_test_summary' as created by 'reeq::get_sig_test_summary'.
output_dir	Which directory should the results be output to
test_name	A name for the hypothesis test that is summarised in the dataset 'x'.
...	Further arguments. Currently unused.

russHyde/reeq documentation built on March 10, 2020, 5:36 a.m.