Man pages for saezlab/SLAPenrich
Sample-population Level Analysis of Pathway enrichments

LUAD_CaseStudyGenomic event matrix derived from variants found in a cohort...
LUAD_CaseStudy_clinicalInfosClinical informations for a cohort of 188 lung adenocarcinoma...
LUAD_CaseStudy_ugsGenomic event matrix derived from variants found in a cohort...
SLAPE.all_genes_exonic_block_lenghts_ensembleGenome-wide total exonic block lenghts
SLAPE.all_genes_exonic_lengths_ensembleGenome-wide exone attributes and genomic coordinates
SLAPE.analysePerforming Sample population Level Analysis of Pathway...
SLAPE.check_and_fix_gs_DatasetCheck and fix gene symbol names in a genomic event dataset
SLAPE.check_and_fix_path_collectionCheck and fix gene symbol names in a collection of pathway...
SLAPE.compute_gene_exon_content_block_lengthsComputing genome-wide total exonic block lengths
SLAPE.core_componentsIdentification of core-component genes shared by multiple...
SLAPE.diff_SLAPE_analysisDifferential SLAPenrichment analysis
SLAPE.gene_ecbl_lengthComputing the total exonic block length of a given gene
SLAPE.heuristic_mut_ex_sortingRun-minimizing permutation of rows and colums of a binary...
SLAPE.hgnc.tableHUGO gene symbols and their previous synonyms (up to February...
SLAPE.MSigDB_KEGG_hugoUpdatedCollection of KEGG pahtway gene-sets from the Molecular...
SLAPE.PATHCOM_HUMANCollection of pahtway gene-sets from Pathway-Commons
SLAPE.PATHCOM_HUMAN_nr_i_hu_2014Collection of pahtway gene-sets from Pathway-Commons (v2014)...
SLAPE.PATHCOM_HUMAN_nr_i_hu_2016Collection of pahtway gene-sets from Pathway-Commons (v2016)...
SLAPE.pathvisGeneratig a heatmap of the alteration matrix of a...
SLAPE.readDatasetReading genomic evant dataset
SLAPE.serialPathVisSystematic generation of heatmaps of the alteration matrices...
SLAPE.update_exon_attributesCreating an updated gene exon attributes data object
SLAPE.update_HGNC_TableUpdating the R data object containing a HUGO approved...
SLAPE.write.tableWriting SLAPenrich results in a csv file
saezlab/SLAPenrich documentation built on May 25, 2017, 11:33 p.m.