SLAPE.compute_gene_exon_content_block_lengths: Computing genome-wide total exonic block lengths

Usage Arguments Value Note See Also

View source: R/SLAPenrich.R

Usage

1

Arguments

ExonAttributes

Dataframe containing genomic coordinates of all the exon for all the genes in the genome. This is available in the SLAPE.all_genes_exonic_lengths_ensemble data object.

Value

A genome-wide named vector containing the total exonic block lengths for all the genes. Names of this vector are offical HUGO gene symbols.

Note

The genome-wide exonic block lengths are precomputed and available in the SLAPE.all_genes_exonic_content_block_lengths_ensemble data object, this function can be used to update this data object with the most-up-to-date information from Ensemble (using biomaRt functions).

See Also

SLAPE.all_genes_exonic_content_block_lengths_ensemble, SLAPE.all_genes_exonic_lengths_ensemble, SLAPE.compute_gene_exon_content_block_lengths,


saezlab/SLAPenrich documentation built on May 29, 2019, 12:57 p.m.