SLAPE.all_genes_exonic_lengths_ensemble: Genome-wide exone attributes and genomic coordinates

In saezlab/SLAPenrich: Sample-population Level Analysis of Pathway enrichments

Description

A data frame containing attributes and chromosomal coordinate of all the gene exones

Format

A data frame with 553609 rows (one for each exone) and the following columns

ensembl_gene_id

String vector containing ensemble gene identifiers;

external_gene_name

String vector containing gene names;

exon_chrom_start

Numerical vector containing chromosomal start positions;

exon_chrom_end

Numerical vector containing chromosomal end positions

Variable name: GEA.

Details

This list has been assembled by using functions from the biomaRt package and can be updated using the SLAPE.update_exon_attributes.

Note

This object is used by the SLAPE.compute_gene_exon_content_block_lengths and SLAPE.gene_ecbl_length function to compute the genome-wide total exonic block lengths or the total exonic block length of a given gene, respectively.

See Also

SLAPE.update_exon_attributes, SLAPE.compute_gene_exon_content_block_lengths SLAPE.gene_ecbl_length

saezlab/SLAPenrich documentation built on May 29, 2019, 12:57 p.m.