SLAPE.gene_ecbl_length: Computing the total exonic block length of a given gene
In saezlab/SLAPenrich: Sample-population Level Analysis of Pathway enrichments
Usage
Arguments
Value
Note
Author(s)
See Also
Usage
1
SLAPE.gene_ecbl_length(ExonAttributes, GENE)
Arguments
ExonAttributes
Dataframe containing genomic coordinates of all the exon for all the genes in the genome.
This is available in the
SLAPE.all_genes_exonic_lengths_ensemble data object.
GENE
A official HUGO gene symbol.
Value
An integer value specifying the total exonic block length of the genes specified in GENE.
Note
All the genome-wide exonic block lengths are precomputed and available in the
SLAPE.all_genes_exonic_content_block_lengths_ensemble data object.
This data object can be updated using the SLAPE.update_exon_attributes function.
Author(s)
Francesco Iorio - iorio@ebi.ac.uk
See Also
SLAPE.all_genes_exonic_lengths_ensemble,
SLAPE.all_genes_exonic_content_block_lengths_ensemble
saezlab/SLAPenrich documentation built on May 29, 2019, 12:57 p.m.
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Usage Arguments Value Note Author(s) See Also
Usage
1 | SLAPE.gene_ecbl_length(ExonAttributes, GENE)
|
Arguments
ExonAttributes |
Dataframe containing genomic coordinates of all the exon for all the genes in the genome.
This is available in the
|
GENE |
A official HUGO gene symbol. |
Value
An integer value specifying the total exonic block length of the genes specified in GENE.
Note
All the genome-wide exonic block lengths are precomputed and available in the
SLAPE.all_genes_exonic_content_block_lengths_ensemble data object.
This data object can be updated using the SLAPE.update_exon_attributes function.
Author(s)
Francesco Iorio - iorio@ebi.ac.uk
See Also
SLAPE.all_genes_exonic_lengths_ensemble,
SLAPE.all_genes_exonic_content_block_lengths_ensemble
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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