SLAPE.update_HGNC_Table: Updating the R data object containing a HUGO approved...
In saezlab/SLAPenrich: Sample-population Level Analysis of Pathway enrichments
Description
Usage
Value
Author(s)
See Also
Description
This function creates a data frame containing up-to-date HUGO Gene Nomenclature Committee (HGNC) approved symbols and their synonyms downloading updated relevant information from the HUGO Gene Nomenclature Committee web-portal (http://www.genenames.org).
This table is used by the
SLAPE.check_and_fix_gs_Dataset and SLAPE.check_and_fix_path_collection functions to check and update the gene symbol identifiers of a integer genomic event matrix. A precomputed data frame (created on February 2016) is available in the
SLAPE.hgnc.table data object.
Usage
1
Value
A data frame with updated approved HUGO gene symbols in one column and their previously approved synonyms in another column.
Author(s)
Francesco Iorio - iorio@ebi.ac.uk
See Also
SLAPE.check_and_fix_path_collection
SLAPE.check_and_fix_gs_Dataset
saezlab/SLAPenrich documentation built on May 29, 2019, 12:57 p.m.
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Description Usage Value Author(s) See Also
Description
This function creates a data frame containing up-to-date HUGO Gene Nomenclature Committee (HGNC) approved symbols and their synonyms downloading updated relevant information from the HUGO Gene Nomenclature Committee web-portal (http://www.genenames.org).
This table is used by the
SLAPE.check_and_fix_gs_Dataset and SLAPE.check_and_fix_path_collection functions to check and update the gene symbol identifiers of a integer genomic event matrix. A precomputed data frame (created on February 2016) is available in the
SLAPE.hgnc.table data object.
Usage
1 |
Value
A data frame with updated approved HUGO gene symbols in one column and their previously approved synonyms in another column.
Author(s)
Francesco Iorio - iorio@ebi.ac.uk
See Also
SLAPE.check_and_fix_path_collection
SLAPE.check_and_fix_gs_Dataset
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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