cellphonedb_score: Function to calculate p-values as in CellPhoneDB

In saezlab/liana: LIANA: a LIgand-receptor ANalysis frAmework

Function to calculate p-values as in CellPhoneDB

Description

Function to calculate p-values as in CellPhoneDB

Usage

cellphonedb_score(
  lr_res,
  perm_means,
  parallelize,
  workers,
  score_col = "pvalue",
  verbose = TRUE,
  ...
)

Arguments

lr_res	liana pipe results
perm_means	permutations obtained via 'get_permutations'
parallelize	logical whether to parallelize
workers	Number of workers to be used in parallelization
score_col	name of the score column
verbose	logical for verbosity
...	placeholder

Value

lr_res + pvalue and lr.mean

saezlab/liana documentation built on Aug. 10, 2024, 8:14 a.m.