get_abundance_summary: Function to get abundance summary

In saezlab/liana: LIANA: a LIgand-receptor ANalysis frAmework

Function to get abundance summary

Description

Function to get abundance summary

Usage

get_abundance_summary(
  sce,
  sample_col,
  idents_col,
  min_cells = 10,
  min_samples = 3,
  min_prop = 0.2
)

Arguments

sce	SingleCellExperiment Object
sample_col	column with sample ids
idents_col	column with cell identity (cell type) ids
min_cells	minimum cells per identity in each sample
min_samples	minimum samples per cell identity
min_prop	minimum proportion of samples in which a cell identity is present (with at least 'min_cells')

Value

a tibble

saezlab/liana documentation built on Aug. 10, 2024, 8:14 a.m.