get_abundance_summary: Function to get abundance summary

View source: R/liana_utils.R

get_abundance_summaryR Documentation

Function to get abundance summary

Description

Function to get abundance summary

Usage

get_abundance_summary(
  sce,
  sample_col,
  idents_col,
  min_cells = 10,
  min_samples = 3,
  min_prop = 0.2
)

Arguments

sce

SingleCellExperiment Object

sample_col

column with sample ids

idents_col

column with cell identity (cell type) ids

min_cells

minimum cells per identity in each sample

min_samples

minimum samples per cell identity

min_prop

minimum proportion of samples in which a cell identity is present (with at least 'min_cells')

Value

a tibble


saezlab/liana documentation built on Nov. 8, 2023, 11:53 a.m.