chord_freq: Frequency ChordDiagram

In saezlab/liana: LIANA: a LIgand-receptor ANalysis frAmework

Frequency ChordDiagram

Description

Frequency ChordDiagram

Usage

chord_freq(
  liana_res,
  source_groups = NULL,
  target_groups = NULL,
  cex = 1,
  transparency = 0.4,
  facing = "clockwise",
  adj = c(-0.5, 0.05),
  ...
)

Arguments

liana_res	aggregated 'liana_wrap' results from multiple methods, or alternatively results from running 'liana_wrap' with a single method. Should be filtered by some condition (e.g. preferential consesus ranking, specific interactions, etc).
source_groups	names of the source (sender) cell types (NULL = no filter)
target_groups	names of the target cell types (NULL = no filter)
cex	label relative font size
transparency	transparency
facing	axis label rotation (check 'circlize::circos.text' for options)
...	other paramters passed to 'circlize::chordDiagram'
offset	for text.

saezlab/liana documentation built on Aug. 10, 2024, 8:14 a.m.