filter_nonabundant_celltypes | R Documentation |
Filter nun-abundant cell types
filter_nonabundant_celltypes(
sce,
sample_col,
idents_col,
min_cells = 10,
min_samples = 3,
min_prop = 0.2,
ctqc = NULL
)
sce |
SingleCellExperiment Object |
sample_col |
column with sample ids |
idents_col |
column with cell identity (cell type) ids |
min_cells |
minimum cells per identity in each sample |
min_samples |
minimum samples per cell identity |
min_prop |
minimum proportion of samples in which a cell identity is present (with at least 'min_cells') |
ctqc |
cell type quality control summary obtained from 'get_abundance_summary' |
a filtered SingleCellExperiment Object
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