BuildMetaCell: metacell function which xxx

In samWieczorek/DAPAR2: Tools for the Differential Analysis of Proteins Abundance with R

metacell function which xxx

Description

xxx

Usage

BuildMetacell(from = NULL, level, qdata = NULL, conds = NULL, df = NULL)

Arguments

from	xxx
level	xxx
qdata	A matrix of quantitative data
conds	xxx
df	A data.frame which contains the type of identification of the entities. It must have the same dimensions as qData.

Value

xxxxx

Author(s)

Samuel Wieczorek

Examples

file <- system.file("extdata", "Exp1_R25_pept.txt", package="DaparToolshedData")
data <- read.table(file, header=TRUE, sep="\t",stringsAsFactors = FALSE)
metadataFile <- system.file("extdata", "samples_Exp1_R25.txt",
package="DaparToolshedData")
metadata <- read.table(metadataFile, header=TRUE, sep="\t", as.is=TRUE,
stringsAsFactors = FALSE)
conds <- metadata$Condition
qdata <- data[,56:61]
df <- data[ , 43:48]
df <- BuildMetacell('maxquant', 'peptide', qdata, conds, df)
df <- BuildMetacell('proline', 'peptide', qdata, conds, df)

samWieczorek/DAPAR2 documentation built on Oct. 15, 2023, 1:45 p.m.