GetNbPeptidesUsed: Computes the number of peptides used for aggregating each...

View source: R/agregation.R

GetNbPeptidesUsedR Documentation

Computes the number of peptides used for aggregating each protein

Description

Method to compute the number of quantified peptides used for aggregating each protein

Usage

GetNbPeptidesUsed(X, pepData)

Arguments

X

An adjacency matrix

pepData

A data.frame of quantitative data

Value

A data.frame

Author(s)

Samuel Wieczorek

Examples

library(QFeatures)
data(Exp1_R25_pept, package="DaparToolshedData")
protID <- "Protein_group_IDs"
obj.pep <- Exp1_R25_pept[seq_len(10)]
X <- BuildAdjacencyMatrix(obj.pep, protID, FALSE)
pepData <- assay(obj.pep)
GetNbPeptidesUsed(X, pepData)


samWieczorek/DAPAR2 documentation built on Oct. 15, 2023, 1:45 p.m.