getProteinsStats: Computes the number of proteins that are only defined by...

View source: R/agregation.R

getProteinsStatsR Documentation

Computes the number of proteins that are only defined by specific peptides, shared peptides or a mixture of two.

Description

This function computes the number of proteins that are only defined by specific peptides, shared peptides or a mixture of two.

Usage

getProteinsStats(matShared)

Arguments

matShared

The adjacency matrix with both specific and shared peptides.

Value

A list

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_pept, package="DaparToolshedData")
protID <- "Protein_group_IDs"
obj <- Exp1_R25_pept[seq_len(20)]
MShared <- BuildAdjacencyMatrix(obj, protID, FALSE)
getProteinsStats(matShared = MShared)


samWieczorek/DAPAR2 documentation built on Oct. 15, 2023, 1:45 p.m.