GetDetailedNbPeptidesUsed: Computes the detailed number of peptides used for aggregating...

View source: R/agregation.R

GetDetailedNbPeptidesUsedR Documentation

Computes the detailed number of peptides used for aggregating each protein

Description

Method to compute the detailed number of quantified peptides used for aggregating each protein

Usage

GetDetailedNbPeptidesUsed(X, qdata.pep)

Arguments

X

An adjacency matrix

qdata.pep

A data.frame of quantitative data

Value

A list of two items

Author(s)

Samuel Wieczorek

Examples

library(DaparToolshedData)
data(Exp1_R25_pept, package="DaparToolshedData")
protID <- "Protein_group_IDs"
X <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(10)], protID, FALSE)
ll.n <- GetDetailedNbPeptidesUsed(X, 
assay(Exp1_R25_pept[seq_len(10)]))


samWieczorek/DAPAR2 documentation built on Oct. 15, 2023, 1:45 p.m.