Description Usage Arguments Value Examples
View source: R/connIntegerDirect.R
Takes in two conns files and analyzes them fully with integer weighting
1 2 | connIntegerDirect(WT_conns, KO_conns, namefirst, namesecond, thresh,
changePerc, viablethresh)
|
WT_conns |
the first conns file |
KO_conns |
the second conns file |
namefirst |
the label you want to give to the first conns file, i.e. "A" |
namesecond |
the label you want to give to the second conns file, i.e. "B" |
thresh |
the threshold for peaks you are interested in |
changePerc |
the percent difference between Ko and WT conns you want to use as a threshold |
viablethresh |
the threshold for peaks you consider viable |
mm10.chr |
the genome file you are referencing to create the conns files |
a completed, sorted, and eleaborated dataframe
1 | SUM.data = connWeight(WT_conns, KO_conns, namefirst, namesecond, thresh, changPerc)
|
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