connInteger: Create a conns files and then analyzes them
In samissimas/ciceroAddition: Additional functions to do analysis on Cicero data

Takes in a cds files and turns them into conns files and then analyzes them with an integer weighting

1 2	connInteger(WT_cicero_cds, KO_cicero_cds, vector, mm10.chr, namefirst, namesecond, thresh, changePerc, viablethresh)

`WT_cicero_cds`	the first cds you want to convert to a conns file
`KO_cicero_cds`	the second cds you want to convert to a conns file
`vector`	the vector containing which chromosones you are interested in
`mm10.chr`	the genome file you are referencing to create the conns files
`namefirst`	the label you want to give to the first conns file, i.e. "A"
`namesecond`	the label you want to give to the second conns file, i.e. "B"
`thresh`	the threshold for peaks you are interested in
`changePerc`	the percent difference between Ko and WT conns you want to use as a threshold
`viablethresh`	the threshold for peaks you consider viable