connWeightDirect: Analyzes two conns files

Description Usage Arguments Value Examples

View source: R/connWeightDirect.R

Description

Takes in two conns files and analyzes them fully with normal weighting

Usage

1
2
connWeightDirect(WT_conns, KO_conns, namefirst, namesecond, thresh,
  changePerc, viablethresh)

Arguments

WT_conns

the first conns file

KO_conns

the second conns file

namefirst

the label you want to give to the first conns file, i.e. "A"

namesecond

the label you want to give to the second conns file, i.e. "B"

thresh

the threshold for peaks you are interested in

changePerc

the percent difference between Ko and WT conns you want to use as a threshold

viablethresh

the threshold for peaks you consider viable

mm10.chr

the genome file you are referencing to create the conns files

Value

a completed, sorted, and eleaborated dataframe

Examples

1
SUM.data = connWeight(WT_conns, KO_conns, namefirst, namesecond, thresh, changPerc)

samissimas/ciceroAddition documentation built on Aug. 10, 2019, 12:02 a.m.