Description Usage Arguments Value Examples
Takes in a cds files and turns them into conns files and then analyzes them with a normal weighting
1 2 | connWeight(WT_cicero_cds, KO_cicero_cds, vector, mm10.chr, namefirst,
namesecond, thresh, changePerc, viablethresh)
|
WT_cicero_cds |
the first cds you want to convert to a conns file |
KO_cicero_cds |
the second cds you want to convert to a conns file |
vector |
the vector containing which chromosones you are interested in |
mm10.chr |
the genome file you are referencing to create the conns files |
namefirst |
the label you want to give to the first conns file, i.e. "A" |
namesecond |
the label you want to give to the second conns file, i.e. "B" |
thresh |
the threshold for peaks you are interested in |
changePerc |
the percent difference between Ko and WT conns you want to use as a threshold |
viablethresh |
the threshold for peaks you consider viable |
a completed, sorted, and eleaborated dataframe
1 | SUM.data = connWeight(WT_cicero_cds, KO_cicero_cds, vector, mm10.chr, namefirst, namesecond, thresh, changPerc)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.